Research
I'm interested in machine learning,
image processing,
geometric deep learning,
and applications utilizing heterogeneous GNNs (HetGNNs).
My earlier research is about modeling objects from the physical world (captured by mesh surface manifolds) which can be interpreted as undirected graphs and processed for interpretation with the help of (GNNs).
The primary focus of my PhD dissertation looks at applications of GNNs in medical imaging and psychoanalysis. Some of the earlier work involves modeling the human brain and its several structures (hippocampus, amygdala, white matter, etc.) using mesh surface manifolds and leveraging a type of GNN: graph convolutional networks (GCNs), to assist in a variety of medical applications focused on the shape analysis of neuroanatomical structures such as:
- the diagnosis of Alzheimer's disease dementia (ADD) based on learning brain shape differences from healthy controls,
- and developing a generative GNN model for generating different brain structures conditioned on pathological features (e.g., ADD diagnosis).
Most recently, my research has dealt with modeling user interactions towards a fixed set of emotional stimuli
(IAPS)
as a heterogeneous interactome. We embed several neurocognitive features in a user-stimulus-category interactome,
describing each individual subject's overall approach and avoidance behavior towards the categories of a stimulus set,
based on a picture rating task administered to a group of anonymized subjects.
The behavioral features embedded in the interactome come from relative preference theory (RPT),
a behavioral framework whose quantitative features appear to encode other known constructs in reward/aversion processing into one function space;
one of those constructs being the Nobel prize-winning prospect theory
by Daniel Kahneman, PhD, and
Amos Tversky, PhD. RPT features have been linked to neural reward circuitry and genetic polymorphisms,
providing a potential utility for predicting expressed preference, and the phenotyping of normative and pathological function (e.g., psychiatric illness, addiction, etc.).
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Analyzing Brain Morphology in Alzheimer’s Disease Using Discriminative and Generative Spiral Networks
Emanuel A. Azcona,
Pierre Besson,
Yunan Wu,
Ajay S. Kurani,
S. Kathleen Bandt,
Todd B. Parrish,
Aggelos K. Katsaggelos
Submitted for peer review, 2021
bioRxiv preprint
In this work: (1) a GNN classifier (using spiral convolution on surface meshes) is used to analyze the efficacy of disease classification
on mesh surface input data from multiple brain regions and compared to using a single hemisphere or a single structure. It outperforms prior work
using spectral GCNs on the same the same tasks, as well as alternative methods that operate on intermediate point cloud representations of 3D shapes.
(2) Provide visual interpretations for regions on the surface of brain structures that more associated to true positive AD predictions which fall in
accordance with the current reports on the structural localization of pathological changes associated to AD.
(3) A generative GNN is also implemented to analyze the effects of phenotypic priors given to the model (e.g., AD diagnosis) in generating subcortical structures.
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Interpretation of Brain Morphology in Association to Alzheimer's Disease Dementia Classification Using Graph Convolutional Networks on Triangulated Meshes
Emanuel Azcona,
Pierre Besson,
Yunan Wu,
Arjun Punjabi,
Adam Martersteck,
Amil Dravid,
Todd B. Parrish,
S. Kathleen Bandt,
Aggelos K. Katsaggelos
Shape in Medical Imaging workshop @ MICCAI, 2020
arXiv preprint /
poster /
slides
A residual graph convolutional network was used in the binary classification of Alzheimer's disease dementia (ADD) strictly based on brain morphology.
Gradient-weighted, class-discriminative localization maps were generated to visualize regions of interest used by the network in classifying ADD.
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Novel age-dependent cortico-subcortical morphologic interactions predict fluid intelligence: A multi-cohort geometric deep learning study.
Yunan Wu,
Pierre Besson,
Emanuel Azcona,
S. Kathleen Bandt,
Todd B. Parrish,
Hans C. Breiter,
Aggelos K. Katsaggelos
Submitted for journal peer review, 2020
bioRxiv preprint
Brain structure is tightly coupled with brain functions, but it remains unclear how cognition is related to brain morphology, and what is consistent across neurodevelopment. In this work, we developed graph convolutional neural networks (gCNNs) to predict Fluid Intelligence (Gf) from shapes of cortical ribbons and subcortical structures. T1-weighted MRIs from two independent cohorts, the Human Connectome Project (HCP; age: 28.81 ± 3.70) and the Adolescent Brain Cognitive Development Study (ABCD; age: 9.93 ± 0.62) were independently analyzed.
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